CRISPRone

CRISPRone report for GCA_003835985.1_ASM383598v1

♦ Seq 1: NSRY01000001.1 Pseudomonas aeruginosa strain U350 IPC946_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 898850 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 410166-411273 bp Zoom in on locus 1 x19 CRISPR array Location: 410166-411273 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 410166-411273 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 410166-411273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSRY01000018.1 Pseudomonas aeruginosa strain U350 IPC946_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 48466 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38293-47995 bp Zoom in on locus 1 x14 x2 x3 CRISPR array Location: 38293-39101 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38293-39101 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39284-39847 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39851-40879 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40890-41873 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41860-43164 bp Gene: COG1203:cas3 Type: Type-I Location: 43222-46452 bp Gene: cd09718:cas1 Type: universal Location: 46449-47423 bp CRISPR array Location: 47688-47775 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47688-47775 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47848-47995 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 47848-47995 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38293-39101 bp]: array | spacers
           [Locus range 47688-47775 bp]: array | spacers
           [Locus range 47848-47995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)