CRISPRone

CRISPRone report for GCA_003836225.1_ASM383622v1

♦ Seq 1: NSSQ01000021.1 Pseudomonas aeruginosa strain PT31M IPC881_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 49449 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38390-48989 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38390-39498 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38390-39498 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39681-40244 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40248-41276 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41287-42270 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42257-43558 bp Gene: COG1203:cas3 Type: Type-I Location: 43969-47199 bp Gene: cd09718:cas1 Type: universal Location: 47196-48170 bp CRISPR array Location: 48422-48989 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48422-48989 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38390-39498 bp]: array | spacers
           [Locus range 48422-48989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSSQ01000003.1 Pseudomonas aeruginosa strain PT31M IPC881_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 868045 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 315265-316013 bp Zoom in on locus 1 x13 CRISPR array Location: 315265-316013 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 315265-316013 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 315265-316013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)