CRISPRone

CRISPRone report for GCA_003836345.1_ASM383634v1

♦ Seq 1: NSSR01000038.1 Pseudomonas aeruginosa strain PhDW6 IPC880_38.1, whole genome shotgun sequence

⇒Summary: seq-len = 23763 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11987-23674 bp Zoom in on locus 1 x25 x22 CRISPR array Location: 11987-13452 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 11987-13452 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 13636-14199 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 14203-15231 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 15242-16225 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 16212-17513 bp Gene: COG1203:cas3 Type: Type-I Location: 17924-21154 bp Gene: cd09718:cas1 Type: universal Location: 21151-22125 bp CRISPR array Location: 22386-23674 bp Num of repeats: 22 Spacers: s25-s45 CRISPR array Location: 22386-23674 bp Num of repeats: 22 Spacers: s25-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11987-13452 bp]: array | spacers
           [Locus range 22386-23674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSSR01000001.1 Pseudomonas aeruginosa strain PhDW6 IPC880_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 716935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218631-219138 bp Zoom in on locus 1 x9 CRISPR array Location: 218631-219138 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 218631-219138 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 218631-219138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)