CRISPRone

CRISPRone report for GCA_003836355.1_ASM383635v1

♦ Seq 1: NSSU01000031.1 Pseudomonas aeruginosa strain LMG2107 IPC877_31.1, whole genome shotgun sequence

⇒Summary: seq-len = 47409 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 502-9745 bp Zoom in on locus 1 x3 x9 CRISPR array Location: 502-650 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 502-650 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 914-1888 bp Gene: COG1203:cas3 Type: Type-I Location: 1885-5115 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5173-6477 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6464-7447 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7458-8486 bp Gene: cd09739:cas6f Type: other Location: 8490-9053 bp CRISPR array Location: 9238-9745 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 9238-9745 bp Num of repeats: 9 Spacers: s3-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 502-650 bp]: array | spacers
           [Locus range 9238-9745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSSU01000002.1 Pseudomonas aeruginosa strain LMG2107 IPC877_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 506211 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498374-499122 bp Zoom in on locus 1 x13 CRISPR array Location: 498374-499122 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 498374-499122 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498374-499122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSSU01000016.1 Pseudomonas aeruginosa strain LMG2107 IPC877_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 101038 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29235-39808 bp Zoom in on locus 1 x12 x11 CRISPR array Location: 29235-29934 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 29235-29934 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 29999-30298 bp Gene: cd09719:cas1 Type: universal Location: 30295-31185 bp Gene: pfam08798:cas6e Type: other Location: 31212-31751 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 31798-32460 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 32462-33604 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 33614-34144 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 34141-35709 bp Gene: cd09641:cas3HD Type: Type-I Location: 35712-38393 bp CRISPR array Location: 39169-39808 bp Num of repeats: 11 Spacers: s12-s21 CRISPR array Location: 39169-39808 bp Num of repeats: 11 Spacers: s12-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29235-29934 bp]: array | spacers
           [Locus range 39169-39808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)