CRISPRone

CRISPRone report for GCA_003836505.1_ASM383650v1

♦ Seq 1: NSTR01000007.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 230272 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148673-158744 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 148673-151852 bp Gene: unk Type: unknown Location: 152217-153551 bp Gene: pfam13280:WYL Type: other Location: 153680-154555 bp Gene: unk Type: unknown Location: 154693-155355 bp Gene: cd09639:cas3 Type: Type-I Location: 155619-158744 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSTR01000026.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_26.1, whole genome shotgun sequence

⇒Summary: seq-len = 62025 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19976-30116 bp Zoom in on locus 1 x9 x18 CRISPR array Location: 19976-20485 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 19976-20485 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 20746-21720 bp Gene: COG1203:cas3 Type: Type-I Location: 21717-24947 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25005-26309 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26296-27279 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27290-28318 bp Gene: cd09739:cas6f Type: other Location: 28322-28885 bp CRISPR array Location: 29069-30116 bp Num of repeats: 18 Spacers: s9-s25 CRISPR array Location: 29069-30116 bp Num of repeats: 18 Spacers: s9-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19976-20485 bp]: array | spacers
           [Locus range 29069-30116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSTR01000006.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 255875 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193970-204658 bp Zoom in on locus 1 x8 x17 CRISPR array Location: 193970-194426 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 193970-194426 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 195213-197885 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 197888-199444 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 199441-199971 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 199981-201123 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 201126-201788 bp Gene: pfam08798:cas6e Type: other Location: 201763-202374 bp Gene: cd09719:cas1 Type: universal Location: 202401-203291 bp Gene: pfam09707:cas2 Type: universal Location: 203288-203587 bp CRISPR array Location: 203652-204658 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 203652-204658 bp Num of repeats: 17 Spacers: s8-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 193970-194426 bp]: array | spacers
           [Locus range 203652-204658 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NSTR01000011.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_11.1, whole genome shotgun sequence

⇒Summary: seq-len = 204909 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 157266-159467 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 157266-157673 bp Gene: unk Type: unknown Location: 157701-158387 bp Gene: COG2378:WYL Type: other Location: 158496-159467 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)