CRISPRone

CRISPRone report for GCA_003836525.1_ASM383652v1

♦ Seq 1: NSTK01000023.1 Pseudomonas aeruginosa strain LiA133_2003 IPC776_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 50631 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1234-11857 bp Zoom in on locus 1 x15 x20 CRISPR array Location: 1234-2103 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1234-2103 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 2367-3341 bp Gene: COG1203:cas3 Type: Type-I Location: 3338-6568 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6626-7930 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7917-8900 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8911-9939 bp Gene: cd09739:cas6f Type: other Location: 9943-10506 bp CRISPR array Location: 10689-11857 bp Num of repeats: 20 Spacers: s15-s33 CRISPR array Location: 10689-11857 bp Num of repeats: 20 Spacers: s15-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1234-2103 bp]: array | spacers
           [Locus range 10689-11857 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSTK01000001.1 Pseudomonas aeruginosa strain LiA133_2003 IPC776_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 813339 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 405294-406042 bp Zoom in on locus 1 x13 CRISPR array Location: 405294-406042 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 405294-406042 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 405294-406042 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSTK01000006.1 Pseudomonas aeruginosa strain LiA133_2003 IPC776_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 419544 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 369387-371589 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 369387-369794 bp Gene: unk Type: unknown Location: 369822-370508 bp Gene: COG2378:WYL Type: other Location: 370618-371589 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)