CRISPRone

CRISPRone report for GCA_003836575.1_ASM383657v1

♦ Seq 1: NSTS01000003.1 Pseudomonas aeruginosa strain J9UH1F IPC742_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 564471 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274879-284991 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 274879-275639 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 274879-275639 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 275704-276003 bp Gene: cd09719:cas1 Type: universal Location: 276000-276311 bp Gene: pfam08798:cas6e Type: other Location: 276338-276877 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 276924-277586 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 277588-278730 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 278740-279270 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 279267-280835 bp Gene: cd09641:cas3HD Type: Type-I Location: 280838-283519 bp CRISPR array Location: 284292-284991 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 284292-284991 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 274879-275639 bp]: array | spacers
           [Locus range 284292-284991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSTS01000020.1 Pseudomonas aeruginosa strain J9UH1F IPC742_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 76460 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37735-48054 bp Zoom in on locus 1 x11 x19 CRISPR array Location: 37735-38363 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 37735-38363 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 38546-39109 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39113-40141 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40152-41135 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41122-42426 bp Gene: COG1203:cas3 Type: Type-I Location: 42484-45714 bp Gene: cd09718:cas1 Type: universal Location: 45711-46685 bp CRISPR array Location: 46946-48054 bp Num of repeats: 19 Spacers: s11-s28 CRISPR array Location: 46946-48054 bp Num of repeats: 19 Spacers: s11-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37735-38363 bp]: array | spacers
           [Locus range 46946-48054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)