CRISPRone

CRISPRone report for GCA_003836705.1_ASM383670v1

♦ Seq 1: NSUE01000025.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_25.1, whole genome shotgun sequence

⇒Summary: seq-len = 72192 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38284-49066 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 38284-39394 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38284-39394 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39577-40140 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40144-41172 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41183-42229 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42216-43502 bp Gene: COG1203:cas3 Type: Type-I Location: 43912-47142 bp Gene: cd09718:cas1 Type: universal Location: 47139-48113 bp CRISPR array Location: 48378-49066 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 48378-49066 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38284-39394 bp]: array | spacers
           [Locus range 48378-49066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSUE01000016.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 190217 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122440-124308 bp Zoom in on locus 1 x2 x9 CRISPR array Location: 122440-122528 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 122440-122528 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 123800-124308 bp Num of repeats: 9 Spacers: s2-s9 CRISPR array Location: 123800-124308 bp Num of repeats: 9 Spacers: s2-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122440-122528 bp]: array | spacers
           [Locus range 123800-124308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSUE01000015.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 204672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97718-98526 bp Zoom in on locus 1 x14 CRISPR array Location: 97718-98526 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 97718-98526 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97718-98526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)