CRISPRone

CRISPRone report for GCA_003836905.1_ASM383690v1

♦ Seq 1: NSUM01000001.1 Pseudomonas aeruginosa strain CN573=PSE143 IPC705_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1450776 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 963351-964758 bp Zoom in on locus 1 x24 CRISPR array Location: 963351-964758 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 963351-964758 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 963351-964758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSUM01000012.1 Pseudomonas aeruginosa strain CN573=PSE143 IPC705_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 77878 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37803-48722 bp Zoom in on locus 1 x12 x28 CRISPR array Location: 37803-38491 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37803-38491 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38674-39237 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39241-40269 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40280-41263 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41250-42554 bp Gene: COG1203:cas3 Type: Type-I Location: 42612-45842 bp Gene: cd09718:cas1 Type: universal Location: 45839-46813 bp CRISPR array Location: 47074-48722 bp Num of repeats: 28 Spacers: s12-s38 CRISPR array Location: 47074-48722 bp Num of repeats: 28 Spacers: s12-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37803-38491 bp]: array | spacers
           [Locus range 47074-48722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)