CRISPRone

CRISPRone report for GCA_003837085.1_ASM383708v1

♦ Seq 1: NSRS01000017.1 Pseudomonas aeruginosa strain U451 IPC976_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 48256 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38246-47948 bp Zoom in on locus 1 x14 x2 x3 CRISPR array Location: 38246-39054 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38246-39054 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39237-39800 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39804-40832 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40843-41826 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41813-43117 bp Gene: COG1203:cas3 Type: Type-I Location: 43175-46405 bp Gene: cd09718:cas1 Type: universal Location: 46402-47376 bp CRISPR array Location: 47641-47728 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47641-47728 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47801-47948 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 47801-47948 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38246-39054 bp]: array | spacers
           [Locus range 47641-47728 bp]: array | spacers
           [Locus range 47801-47948 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSRS01000002.1 Pseudomonas aeruginosa strain U451 IPC976_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 959551 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 410166-411273 bp Zoom in on locus 1 x19 CRISPR array Location: 410166-411273 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 410166-411273 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 410166-411273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)