CRISPRone

CRISPRone report for GCA_003837165.1_ASM383716v1

♦ Seq 1: NSSA01000008.1 Pseudomonas aeruginosa strain U0310A IPC935_8.1, whole genome shotgun sequence

⇒Summary: seq-len = 300421 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281856-292264 bp Zoom in on locus 1 x40 CRISPR array Location: 281856-284472 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 281856-284472 bp Num of repeats: 40 Spacers: s1-s39 Gene: cd09725:cas2 Type: universal Location: 284654-284944 bp Gene: cd09721:cas1 Type: universal Location: 284954-285994 bp Gene: pfam01930:cas4 Type: Type-I Location: 285998-286630 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 286649-287518 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 287515-289308 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 289305-289979 bp Gene: cd09641:cas3HD Type: Type-I Location: 290030-292264 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 281856-284472 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSSA01000001.1 Pseudomonas aeruginosa strain U0310A IPC935_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 829403 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182006-192763 bp Zoom in on locus 1 x18 x8 CRISPR array Location: 182006-183073 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 182006-183073 bp Num of repeats: 18 Spacers: s1-s17 Gene: pfam09707:cas2 Type: universal Location: 183138-183437 bp Gene: cd09719:cas1 Type: universal Location: 183434-184324 bp Gene: pfam08798:cas6e Type: other Location: 184351-184890 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 184937-185599 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 185601-186743 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 186753-187283 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 187280-188848 bp Gene: unk Type: unknown Location: 188851-189561 bp Gene: cd09641:cas3HD Type: Type-I Location: 189580-191532 bp CRISPR array Location: 192308-192763 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 192308-192763 bp Num of repeats: 8 Spacers: s18-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182006-183073 bp]: array | spacers
           [Locus range 192308-192763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)