CRISPRone

CRISPRone report for GCA_003837195.1_ASM383719v1

♦ Seq 1: NSSP01000009.1 Pseudomonas aeruginosa strain Tu863 IPC884_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 299681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218373-218880 bp Zoom in on locus 1 x9 CRISPR array Location: 218373-218880 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 218373-218880 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 218373-218880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSSP01000017.1 Pseudomonas aeruginosa strain Tu863 IPC884_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 48975 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 522-11256 bp Zoom in on locus 1 x11 x26 CRISPR array Location: 522-1151 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 522-1151 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1415-2389 bp Gene: COG1203:cas3 Type: Type-I Location: 2386-5607 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5665-6969 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6956-7939 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7950-8978 bp Gene: cd09739:cas6f Type: other Location: 8982-9545 bp CRISPR array Location: 9729-11256 bp Num of repeats: 26 Spacers: s11-s35 CRISPR array Location: 9729-11256 bp Num of repeats: 26 Spacers: s11-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 522-1151 bp]: array | spacers
           [Locus range 9729-11256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)