CRISPRone

CRISPRone report for GCA_003837245.1_ASM383724v1

♦ Seq 1: NSST01000004.1 Pseudomonas aeruginosa strain LMG5031 IPC878_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 331961 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62419-62987 bp Zoom in on locus 1 x10 CRISPR array Location: 62419-62987 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 62419-62987 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62419-62987 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSST01000001.1 Pseudomonas aeruginosa strain LMG5031 IPC878_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 518452 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90350-92552 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 90350-90757 bp Gene: unk Type: unknown Location: 90785-91471 bp Gene: COG2378:WYL Type: other Location: 91581-92552 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSST01000003.1 Pseudomonas aeruginosa strain LMG5031 IPC878_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 383539 bp; # of CRISPR array = 1; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1065-1814 bp 2 Locus 2: 19421-29282 bp Zoom in on locus 1 x13 Zoom in on locus 2 CRISPR array Location: 1065-1814 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1065-1814 bp Num of repeats: 13 Spacers: s1-s12 Gene: mkCas0115:csx3 Type: other Location: 19421-21031 bp Gene: pfam13280:WYL Type: other Location: 21192-22208 bp Gene: unk Type: unknown Location: 23480-23659 bp Gene: unk Type: unknown Location: 23969-24502 bp Gene: pfam13280:WYL Type: other Location: 24517-25392 bp Gene: unk Type: unknown Location: 25523-25810 bp Gene: unk Type: unknown Location: 25945-26523 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 26916-29282 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1065-1814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NSST01000016.1 Pseudomonas aeruginosa strain LMG5031 IPC878_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 128337 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5126-15826 bp Zoom in on locus 1 x11 x17 CRISPR array Location: 5126-5765 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 5126-5765 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09641:cas3HD Type: Type-I Location: 6360-9032 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 9035-10603 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 10600-11130 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 11140-12282 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 12285-12947 bp Gene: pfam08798:cas6e Type: other Location: 12994-13536 bp Gene: cd09719:cas1 Type: universal Location: 13563-14453 bp Gene: pfam09707:cas2 Type: universal Location: 14450-14749 bp CRISPR array Location: 14817-15826 bp Num of repeats: 17 Spacers: s11-s26 CRISPR array Location: 14817-15826 bp Num of repeats: 17 Spacers: s11-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5126-5765 bp]: array | spacers
           [Locus range 14817-15826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)