CRISPRone

CRISPRone report for GCA_003837365.1_ASM383736v1

♦ Seq 1: NSTJ01000032.1 Pseudomonas aeruginosa strain LiA145_2005 IPC780_32.1, whole genome shotgun sequence

⇒Summary: seq-len = 49190 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 575-11664 bp Zoom in on locus 1 x24 x19 CRISPR array Location: 575-1983 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 575-1983 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 2243-3208 bp Gene: COG1203:cas3 Type: Type-I Location: 3205-6435 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6493-7797 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7784-8767 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8778-9806 bp Gene: cd09739:cas6f Type: other Location: 9810-10373 bp CRISPR array Location: 10557-11664 bp Num of repeats: 19 Spacers: s24-s41 CRISPR array Location: 10557-11664 bp Num of repeats: 19 Spacers: s24-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 575-1983 bp]: array | spacers
           [Locus range 10557-11664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSTJ01000041.1 Pseudomonas aeruginosa strain LiA145_2005 IPC780_41.1, whole genome shotgun sequence

⇒Summary: seq-len = 25601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16729-18317 bp Zoom in on locus 1 x27 CRISPR array Location: 16729-18317 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 16729-18317 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16729-18317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)