CRISPRone

CRISPRone report for GCA_003837375.1_ASM383737v1

♦ Seq 1: NSSX01000022.1 Pseudomonas aeruginosa strain Us411 IPC860_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 47876 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 514-9681 bp Zoom in on locus 1 x8 x3 CRISPR array Location: 514-962 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 514-962 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 1213-2187 bp Gene: COG1203:cas3 Type: Type-I Location: 2184-5414 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5472-6776 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6763-7746 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7757-8785 bp Gene: cd09739:cas6f Type: other Location: 8789-9352 bp CRISPR array Location: 9535-9681 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 9535-9681 bp Num of repeats: 3 Spacers: s8-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 514-962 bp]: array | spacers
           [Locus range 9535-9681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSSX01000008.1 Pseudomonas aeruginosa strain Us411 IPC860_8.1, whole genome shotgun sequence

⇒Summary: seq-len = 239417 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238274-238902 bp Zoom in on locus 1 x11 CRISPR array Location: 238274-238902 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 238274-238902 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 238274-238902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)