CRISPRone

CRISPRone report for GCA_003838485.1_ASM383848v1

♦ Seq 1: NSVI01000004.1 Pseudomonas aeruginosa strain PUPa3 IPC595_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 522897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 521253-522360 bp Zoom in on locus 1 x19 CRISPR array Location: 521253-522360 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 521253-522360 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 521253-522360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSVI01000010.1 Pseudomonas aeruginosa strain PUPa3 IPC595_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 342290 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37628-47887 bp Zoom in on locus 1 x16 x13 CRISPR array Location: 37628-38557 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37628-38557 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38740-39303 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39307-40335 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40346-41329 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41316-42620 bp Gene: COG1203:cas3 Type: Type-I Location: 42678-45908 bp Gene: cd09718:cas1 Type: universal Location: 45905-46879 bp CRISPR array Location: 47140-47887 bp Num of repeats: 13 Spacers: s16-s27 CRISPR array Location: 47140-47887 bp Num of repeats: 13 Spacers: s16-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37628-38557 bp]: array | spacers
           [Locus range 47140-47887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)