CRISPRone

CRISPRone report for GCA_003838555.1_ASM383855v1

♦ Seq 1: NSVS01000005.1 Pseudomonas aeruginosa strain AMT0006-1 IPC544_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 547756 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13607-23671 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 13607-16732 bp Gene: unk Type: unknown Location: 16994-17656 bp Gene: pfam13280:WYL Type: other Location: 17794-18669 bp Gene: unk Type: unknown Location: 18796-20127 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 20492-23671 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSVS01000016.1 Pseudomonas aeruginosa strain AMT0006-1 IPC544_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 77005 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37734-49005 bp Zoom in on locus 1 x23 x23 CRISPR array Location: 37734-39082 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 37734-39082 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39265-39828 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39832-40860 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40871-41854 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41841-43145 bp Gene: COG1203:cas3 Type: Type-I Location: 43203-46433 bp Gene: cd09718:cas1 Type: universal Location: 46430-47404 bp CRISPR array Location: 47656-49005 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 47656-49005 bp Num of repeats: 23 Spacers: s23-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37734-39082 bp]: array | spacers
           [Locus range 47656-49005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSVS01000001.1 Pseudomonas aeruginosa strain AMT0006-1 IPC544_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 943655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 493115-494043 bp Zoom in on locus 1 x16 CRISPR array Location: 493115-494043 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 493115-494043 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 493115-494043 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)