CRISPRone

CRISPRone report for GCA_003838605.1_ASM383860v1

♦ Seq 1: NSVU01000019.1 Pseudomonas aeruginosa strain AMT0005-1 IPC539_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 66851 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56554-66337 bp Zoom in on locus 1 x11 x10 CRISPR array Location: 56554-57182 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 56554-57182 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 57366-57929 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 57933-58961 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 58972-59955 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 59942-61246 bp Gene: COG1203:cas3 Type: Type-I Location: 61304-64534 bp Gene: cd09718:cas1 Type: universal Location: 64531-65505 bp CRISPR array Location: 65770-66337 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 65770-66337 bp Num of repeats: 10 Spacers: s11-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 56554-57182 bp]: array | spacers
           [Locus range 65770-66337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSVU01000014.1 Pseudomonas aeruginosa strain AMT0005-1 IPC539_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 109384 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516-1625 bp Zoom in on locus 1 x19 CRISPR array Location: 516-1625 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 516-1625 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 516-1625 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)