CRISPRone

CRISPRone report for GCA_003839025.1_ASM383902v1

♦ Seq 1: NSXA01000012.1 Pseudomonas aeruginosa strain AUS483 IPC434_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 244410 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114963-123703 bp 2 Locus 2: 189854-190062 bp Zoom in on locus 1 Zoom in on locus 2 x4 Gene: pfam13280:WYL Type: other Location: 114963-115832 bp Gene: unk Type: unknown Location: 116173-116316 bp Gene: unk Type: unknown Location: 116491-118629 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 119190-120410 bp Gene: cd09639:cas3 Type: Type-I Location: 121337-123703 bp CRISPR array Location: 189854-190062 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 189854-190062 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 189854-190062 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSXA01000004.1 Pseudomonas aeruginosa strain AUS483 IPC434_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 533706 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92410-94612 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 92410-92817 bp Gene: unk Type: unknown Location: 92845-93531 bp Gene: COG2378:WYL Type: other Location: 93641-94612 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSXA01000006.1 Pseudomonas aeruginosa strain AUS483 IPC434_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 460587 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 370567-371254 bp Zoom in on locus 1 x12 CRISPR array Location: 370567-371254 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 370567-371254 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 370567-371254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NSXA01000016.1 Pseudomonas aeruginosa strain AUS483 IPC434_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 178561 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60385-70419 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 60385-61133 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 60385-61133 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 61306-61869 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 61873-62901 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 62912-63895 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 63882-65186 bp Gene: COG1203:cas3 Type: Type-I Location: 65244-68480 bp Gene: cd09718:cas1 Type: universal Location: 68477-69451 bp CRISPR array Location: 69732-70419 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 69732-70419 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 60385-61133 bp]: array | spacers
           [Locus range 69732-70419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)