CRISPRone

CRISPRone report for GCA_003839035.1_ASM383903v1

♦ Seq 1: NSXC01000007.1 Pseudomonas aeruginosa strain AUS392 IPC426_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 294837 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188341-198731 bp Zoom in on locus 1 x6 x2 x11 CRISPR array Location: 188341-188674 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 188341-188674 bp Num of repeats: 6 Spacers: s1-s5 Gene: pfam09707:cas2 Type: universal Location: 188739-189038 bp Gene: cd09719:cas1 Type: universal Location: 189035-189925 bp Gene: pfam08798:cas6e Type: other Location: 189952-190491 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 190538-191200 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 191202-192344 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 192354-192884 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 192881-194449 bp Gene: cd09641:cas3HD Type: Type-I Location: 194452-197133 bp CRISPR array Location: 197908-197997 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 197908-197997 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 198092-198731 bp Num of repeats: 11 Spacers: s7-s16 CRISPR array Location: 198092-198731 bp Num of repeats: 11 Spacers: s7-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 188341-188674 bp]: array | spacers
           [Locus range 197908-197997 bp]: array | spacers
           [Locus range 198092-198731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)