CRISPRone

CRISPRone report for GCA_003839065.1_ASM383906v1

♦ Seq 1: NSXG01000018.1 Pseudomonas aeruginosa strain AUS150 IPC390_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 146519 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98428-106689 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98428-100038 bp Gene: pfam13280:WYL Type: other Location: 100199-101215 bp Gene: COG2378:WYL Type: other Location: 101957-102799 bp Gene: unk Type: unknown Location: 102930-103217 bp Gene: unk Type: unknown Location: 103352-103930 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104323-106689 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSXG01000025.1 Pseudomonas aeruginosa strain AUS150 IPC390_25.1, whole genome shotgun sequence

⇒Summary: seq-len = 73595 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34059-45100 bp Zoom in on locus 1 x11 x31 CRISPR array Location: 34059-34687 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 34059-34687 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 34871-35434 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35438-36466 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36477-37460 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 37447-38751 bp Gene: COG1203:cas3 Type: Type-I Location: 38809-42039 bp Gene: cd09718:cas1 Type: universal Location: 42036-43010 bp CRISPR array Location: 43272-45100 bp Num of repeats: 31 Spacers: s11-s40 CRISPR array Location: 43272-45100 bp Num of repeats: 31 Spacers: s11-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34059-34687 bp]: array | spacers
           [Locus range 43272-45100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)