CRISPRone

CRISPRone report for GCA_003839215.1_ASM383921v1

♦ Seq 1: NSXL01000018.1 Pseudomonas aeruginosa strain AUS124 IPC368_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 50029 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37725-49653 bp Zoom in on locus 1 x25 x26 CRISPR array Location: 37725-39191 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 37725-39191 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 39375-39938 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39942-40970 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40981-41964 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41951-43252 bp Gene: COG1203:cas3 Type: Type-I Location: 43663-46893 bp Gene: cd09718:cas1 Type: universal Location: 46890-47864 bp CRISPR array Location: 48125-49653 bp Num of repeats: 26 Spacers: s25-s49 CRISPR array Location: 48125-49653 bp Num of repeats: 26 Spacers: s25-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37725-39191 bp]: array | spacers
           [Locus range 48125-49653 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSXL01000001.1 Pseudomonas aeruginosa strain AUS124 IPC368_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 896547 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 408095-408962 bp Zoom in on locus 1 x15 CRISPR array Location: 408095-408962 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 408095-408962 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 408095-408962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)