CRISPRone

CRISPRone report for GCA_003839365.1_ASM383936v1

♦ Seq 1: NSXR01000016.1 Pseudomonas aeruginosa strain AUS503 IPC353_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 90146 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30419-35779 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 30419-31459 bp Gene: unk Type: unknown Location: 31456-32934 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 32960-35350 bp Gene: cls001593:casR Type: Type-I Location: 35462-35779 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSXR01000022.1 Pseudomonas aeruginosa strain AUS503 IPC353_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 46706 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 486-11699 bp Zoom in on locus 1 x26 x13 CRISPR array Location: 486-2016 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 486-2016 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 2276-3250 bp Gene: COG1203:cas3 Type: Type-I Location: 3247-6483 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6894-8195 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8182-9165 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9176-10204 bp Gene: cd09739:cas6f Type: other Location: 10208-10771 bp CRISPR array Location: 10956-11699 bp Num of repeats: 13 Spacers: s26-s37 CRISPR array Location: 10956-11699 bp Num of repeats: 13 Spacers: s26-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486-2016 bp]: array | spacers
           [Locus range 10956-11699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSXR01000045.1 Pseudomonas aeruginosa strain AUS503 IPC353_45.1, whole genome shotgun sequence

⇒Summary: seq-len = 1367 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 487-1055 bp Zoom in on locus 1 x10 CRISPR array Location: 487-1055 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 487-1055 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 487-1055 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)