CRISPRone

CRISPRone report for GCA_003839405.1_ASM383940v1

♦ Seq 1: NSXV01000001.1 Pseudomonas aeruginosa strain AUS073 IPC346_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 959124 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 422659-423406 bp Zoom in on locus 1 x13 CRISPR array Location: 422659-423406 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 422659-423406 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 422659-423406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSXV01000009.1 Pseudomonas aeruginosa strain AUS073 IPC346_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 292123 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97068-108088 bp Zoom in on locus 1 x8 x16 CRISPR array Location: 97068-97524 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 97068-97524 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 98299-101007 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 101369-102937 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 102934-103464 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 103474-104616 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 104618-105280 bp Gene: pfam08798:cas6e Type: other Location: 105255-105866 bp Gene: cd09719:cas1 Type: universal Location: 105893-106783 bp Gene: pfam09707:cas2 Type: universal Location: 106780-107079 bp CRISPR array Location: 107144-108088 bp Num of repeats: 16 Spacers: s8-s22 CRISPR array Location: 107144-108088 bp Num of repeats: 16 Spacers: s8-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97068-97524 bp]: array | spacers
           [Locus range 107144-108088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSXV01000028.1 Pseudomonas aeruginosa strain AUS073 IPC346_28.1, whole genome shotgun sequence

⇒Summary: seq-len = 34308 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33168-33976 bp Zoom in on locus 1 x14 CRISPR array Location: 33168-33976 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 33168-33976 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33168-33976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NSXV01000024.1 Pseudomonas aeruginosa strain AUS073 IPC346_24.1, whole genome shotgun sequence

⇒Summary: seq-len = 46873 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 387-9808 bp Zoom in on locus 1 x6 x9 CRISPR array Location: 387-716 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 387-716 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 976-1950 bp Gene: COG1203:cas3 Type: Type-I Location: 1947-5177 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5235-6539 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6526-7509 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7520-8548 bp Gene: cd09739:cas6f Type: other Location: 8552-9115 bp CRISPR array Location: 9300-9808 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 9300-9808 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 387-716 bp]: array | spacers
           [Locus range 9300-9808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)