CRISPRone

CRISPRone report for GCA_003839445.1_ASM383944v1

♦ Seq 1: NSYH01000014.1 Pseudomonas aeruginosa strain AUS058 IPC306_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 122077 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241-1588 bp Zoom in on locus 1 x23 CRISPR array Location: 241-1588 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 241-1588 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241-1588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSYH01000026.1 Pseudomonas aeruginosa strain AUS058 IPC306_26.1, whole genome shotgun sequence

⇒Summary: seq-len = 82549 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20435-30334 bp Zoom in on locus 1 x15 x8 CRISPR array Location: 20435-21304 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 20435-21304 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 21564-22538 bp Gene: COG1203:cas3 Type: Type-I Location: 22535-25765 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25823-27127 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27114-28097 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28108-29136 bp Gene: cd09739:cas6f Type: other Location: 29140-29703 bp CRISPR array Location: 29887-30334 bp Num of repeats: 8 Spacers: s15-s21 CRISPR array Location: 29887-30334 bp Num of repeats: 8 Spacers: s15-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20435-21304 bp]: array | spacers
           [Locus range 29887-30334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)