CRISPRone

CRISPRone report for GCA_003839505.1_ASM383950v1

♦ Seq 1: NSYB01000002.1 Pseudomonas aeruginosa strain AUS304 IPC327_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 506747 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142572-143739 bp Zoom in on locus 1 x20 CRISPR array Location: 142572-143739 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 142572-143739 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142572-143739 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSYB01000015.1 Pseudomonas aeruginosa strain AUS304 IPC327_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 143924 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117138-130228 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 117138-117440 bp Gene: cd09641:cas3HD Type: Type-I Location: 127122-128981 bp Gene: unk Type: unknown Location: 129154-129387 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 129923-130228 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSYB01000032.1 Pseudomonas aeruginosa strain AUS304 IPC327_32.1, whole genome shotgun sequence

⇒Summary: seq-len = 47916 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37052-47492 bp Zoom in on locus 1 x10 x22 CRISPR array Location: 37052-37620 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 37052-37620 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 37804-38367 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38371-39399 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39410-40393 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40380-41684 bp Gene: COG1203:cas3 Type: Type-I Location: 41742-44972 bp Gene: cd09718:cas1 Type: universal Location: 44969-45943 bp CRISPR array Location: 46205-47492 bp Num of repeats: 22 Spacers: s10-s30 CRISPR array Location: 46205-47492 bp Num of repeats: 22 Spacers: s10-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37052-37620 bp]: array | spacers
           [Locus range 46205-47492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)