CRISPRone

CRISPRone report for GCA_003839665.1_ASM383966v1

♦ Seq 1: NSYV01000002.1 Pseudomonas aeruginosa strain AUS088 IPC273_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 706823 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 685-1732 bp Zoom in on locus 1 x18 CRISPR array Location: 685-1732 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 685-1732 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 685-1732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSYV01000017.1 Pseudomonas aeruginosa strain AUS088 IPC273_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 70188 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38743-48764 bp Zoom in on locus 1 x14 x11 CRISPR array Location: 38743-39551 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38743-39551 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39733-40296 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40300-41328 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41339-42322 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42309-43613 bp Gene: COG1203:cas3 Type: Type-I Location: 43671-46901 bp Gene: cd09718:cas1 Type: universal Location: 46898-47872 bp CRISPR array Location: 48137-48764 bp Num of repeats: 11 Spacers: s14-s23 CRISPR array Location: 48137-48764 bp Num of repeats: 11 Spacers: s14-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38743-39551 bp]: array | spacers
           [Locus range 48137-48764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)