CRISPRone

CRISPRone report for GCA_003840005.1_ASM384000v1

♦ Seq 1: NSZP01000022.1 Pseudomonas aeruginosa strain AUS183 IPC201_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 81835 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 823-12639 bp Zoom in on locus 1 x36 x19 CRISPR array Location: 823-2952 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 823-2952 bp Num of repeats: 36 Spacers: s1-s35 Gene: cd09718:cas1 Type: universal Location: 3216-4190 bp Gene: COG1203:cas3 Type: Type-I Location: 4187-7417 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7475-8779 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8766-9749 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9760-10788 bp Gene: cd09739:cas6f Type: other Location: 10792-11355 bp CRISPR array Location: 11539-12639 bp Num of repeats: 19 Spacers: s36-s53 CRISPR array Location: 11539-12639 bp Num of repeats: 19 Spacers: s36-s53 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 823-2952 bp]: array | spacers
           [Locus range 11539-12639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSZP01000019.1 Pseudomonas aeruginosa strain AUS183 IPC201_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 109292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 825-1633 bp Zoom in on locus 1 x14 CRISPR array Location: 825-1633 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 825-1633 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 825-1633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSZP01000006.1 Pseudomonas aeruginosa strain AUS183 IPC201_6.1, whole genome shotgun sequence

⇒Summary: seq-len = 356427 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 327723-337794 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 327723-330902 bp Gene: unk Type: unknown Location: 331267-332601 bp Gene: pfam13280:WYL Type: other Location: 332730-333605 bp Gene: unk Type: unknown Location: 333743-334405 bp Gene: cd09639:cas3 Type: Type-I Location: 334669-337794 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)