CRISPRone

CRISPRone report for GCA_003840105.1_ASM384010v1

♦ Seq 1: NSZY01000004.1 Pseudomonas aeruginosa strain 886-1 IPC102_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 478389 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188790-201013 bp Zoom in on locus 1 x22 x27 CRISPR array Location: 188790-190101 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 188790-190101 bp Num of repeats: 22 Spacers: s1-s21 Gene: pfam09707:cas2 Type: universal Location: 190229-190528 bp Gene: cd09719:cas1 Type: universal Location: 190525-191415 bp Gene: pfam08798:cas6e Type: other Location: 191442-191981 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 192028-192690 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 192692-193834 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 193844-194374 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 194371-195939 bp Gene: cd09641:cas3HD Type: Type-I Location: 195942-198623 bp CRISPR array Location: 199399-201013 bp Num of repeats: 27 Spacers: s22-s47 CRISPR array Location: 199399-201013 bp Num of repeats: 27 Spacers: s22-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 188790-190101 bp]: array | spacers
           [Locus range 199399-201013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)