CRISPRone

CRISPRone report for GCA_003840145.1_ASM384014v1

♦ Seq 1: NSZZ01000016.1 Pseudomonas aeruginosa strain 994 IPC101_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 78355 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37567-48488 bp Zoom in on locus 1 x26 x14 CRISPR array Location: 37567-39094 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 37567-39094 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 39277-39840 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39844-40872 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40883-41866 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41853-43157 bp Gene: COG1203:cas3 Type: Type-I Location: 43215-46445 bp Gene: cd09718:cas1 Type: universal Location: 46442-47416 bp CRISPR array Location: 47681-48488 bp Num of repeats: 14 Spacers: s26-s38 CRISPR array Location: 47681-48488 bp Num of repeats: 14 Spacers: s26-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37567-39094 bp]: array | spacers
           [Locus range 47681-48488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSZZ01000001.1 Pseudomonas aeruginosa strain 994 IPC101_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 911401 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 416910-417538 bp Zoom in on locus 1 x11 CRISPR array Location: 416910-417538 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 416910-417538 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 416910-417538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)