CRISPRone

CRISPRone report for GCA_003840165.1_ASM384016v1

♦ Seq 1: NTAB01000022.1 Pseudomonas aeruginosa strain 982 IPC99_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 77060 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66074-76341 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 66074-67062 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 66074-67062 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 67245-67808 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 67812-68840 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 68851-69834 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 69821-71125 bp Gene: COG1203:cas3 Type: Type-I Location: 71183-74422 bp Gene: cd09718:cas1 Type: universal Location: 74419-75393 bp CRISPR array Location: 75654-76341 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 75654-76341 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 66074-67062 bp]: array | spacers
           [Locus range 75654-76341 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NTAB01000005.1 Pseudomonas aeruginosa strain 982 IPC99_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 442039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128490-129177 bp Zoom in on locus 1 x12 CRISPR array Location: 128490-129177 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 128490-129177 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128490-129177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NTAB01000003.1 Pseudomonas aeruginosa strain 982 IPC99_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 610858 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 303647-314340 bp Zoom in on locus 1 x17 x8 CRISPR array Location: 303647-304651 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 303647-304651 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 304716-305015 bp Gene: cd09719:cas1 Type: universal Location: 305012-305902 bp Gene: pfam08798:cas6e Type: other Location: 305929-306468 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 306515-307177 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 307179-308321 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 308331-308861 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 308858-310426 bp Gene: cd09641:cas3HD Type: Type-I Location: 310429-313110 bp CRISPR array Location: 313885-314340 bp Num of repeats: 8 Spacers: s17-s23 CRISPR array Location: 313885-314340 bp Num of repeats: 8 Spacers: s17-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 303647-304651 bp]: array | spacers
           [Locus range 313885-314340 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)