CRISPRone

CRISPRone report for GCA_003840405.1_ASM384040v1

♦ Seq 1: NSWP01000002.1 Pseudomonas aeruginosa strain AUS675 IPC463_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 791771 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182756-193573 bp Zoom in on locus 1 x12 x2 x12 CRISPR array Location: 182756-183455 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 182756-183455 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 183520-183819 bp Gene: cd09719:cas1 Type: universal Location: 183816-184706 bp Gene: pfam08798:cas6e Type: other Location: 184733-185272 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 185319-185981 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 185983-187125 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 187135-187665 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 187662-189230 bp Gene: cd09641:cas3HD Type: Type-I Location: 189233-191914 bp CRISPR array Location: 192689-192778 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 192689-192778 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 192873-193573 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 192873-193573 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182756-183455 bp]: array | spacers
           [Locus range 192689-192778 bp]: array | spacers
           [Locus range 192873-193573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSWP01000020.1 Pseudomonas aeruginosa strain AUS675 IPC463_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 39415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38166-39095 bp Zoom in on locus 1 x16 CRISPR array Location: 38166-39095 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 38166-39095 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38166-39095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSWP01000022.1 Pseudomonas aeruginosa strain AUS675 IPC463_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 29496 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 348-615 bp Zoom in on locus 1 x5 CRISPR array Location: 348-615 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 348-615 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 348-615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)