CRISPRone

CRISPRone report for GCA_003840785.1_ASM384078v1

♦ Seq 1: NSYR01000033.1 Pseudomonas aeruginosa strain AUS301 IPC279_33.1, whole genome shotgun sequence

⇒Summary: seq-len = 13017 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1845-11932 bp Zoom in on locus 1 x17 x8 CRISPR array Location: 1845-2835 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1845-2835 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 3095-4069 bp Gene: COG1203:cas3 Type: Type-I Location: 4066-7296 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7354-8658 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8645-9628 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9639-10667 bp Gene: cd09739:cas6f Type: other Location: 10671-11234 bp CRISPR array Location: 11484-11932 bp Num of repeats: 8 Spacers: s17-s23 CRISPR array Location: 11484-11932 bp Num of repeats: 8 Spacers: s17-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1845-2835 bp]: array | spacers
           [Locus range 11484-11932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSYR01000026.1 Pseudomonas aeruginosa strain AUS301 IPC279_26.1, whole genome shotgun sequence

⇒Summary: seq-len = 37657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 467-914 bp Zoom in on locus 1 x8 CRISPR array Location: 467-914 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 467-914 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 467-914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSYR01000003.1 Pseudomonas aeruginosa strain AUS301 IPC279_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 644071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 492863-494217 bp Zoom in on locus 1 x23 CRISPR array Location: 492863-494217 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 492863-494217 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 492863-494217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)