CRISPRone

CRISPRone report for GCA_003840975.1_ASM384097v1

♦ Seq 1: NSYY01000027.1 Pseudomonas aeruginosa strain AUS423 IPC264_27.1, whole genome shotgun sequence

⇒Summary: seq-len = 45935 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35738-45440 bp Zoom in on locus 1 x14 x2 x3 CRISPR array Location: 35738-36546 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 35738-36546 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 36729-37292 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37296-38324 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38335-39318 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39305-40609 bp Gene: COG1203:cas3 Type: Type-I Location: 40667-43897 bp Gene: cd09718:cas1 Type: universal Location: 43894-44868 bp CRISPR array Location: 45133-45220 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 45133-45220 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 45293-45440 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 45293-45440 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35738-36546 bp]: array | spacers
           [Locus range 45133-45220 bp]: array | spacers
           [Locus range 45293-45440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSYY01000008.1 Pseudomonas aeruginosa strain AUS423 IPC264_8.1, whole genome shotgun sequence

⇒Summary: seq-len = 348429 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 346827-347934 bp Zoom in on locus 1 x19 CRISPR array Location: 346827-347934 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 346827-347934 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 346827-347934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)