CRISPRone

CRISPRone report for GCA_003841085.1_ASM384108v1

♦ Seq 1: NSZQ01000003.1 Pseudomonas aeruginosa strain AUS127 IPC197_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 562738 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 430718-432758 bp Zoom in on locus 1 Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 430718-431725 bp Gene: unk Type: unknown Location: 431729-432040 bp Gene: cd06127:DEDDh Type: Type-I Location: 432153-432758 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NSZQ01000004.1 Pseudomonas aeruginosa strain AUS127 IPC197_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 479135 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182115-182383 bp Zoom in on locus 1 x5 CRISPR array Location: 182115-182383 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 182115-182383 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182115-182383 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NSZQ01000021.1 Pseudomonas aeruginosa strain AUS127 IPC197_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 70412 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37999-48078 bp Zoom in on locus 1 x13 x13 CRISPR array Location: 37999-38748 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 37999-38748 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 38931-39494 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39498-40526 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40537-41520 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41507-42811 bp Gene: COG1203:cas3 Type: Type-I Location: 42869-46099 bp Gene: cd09718:cas1 Type: universal Location: 46096-47070 bp CRISPR array Location: 47331-48078 bp Num of repeats: 13 Spacers: s13-s24 CRISPR array Location: 47331-48078 bp Num of repeats: 13 Spacers: s13-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37999-38748 bp]: array | spacers
           [Locus range 47331-48078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NSZQ01000001.1 Pseudomonas aeruginosa strain AUS127 IPC197_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 840096 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196811-207812 bp Zoom in on locus 1 x21 x2 x6 CRISPR array Location: 196811-198060 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 196811-198060 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09707:cas2 Type: universal Location: 198125-198424 bp Gene: cd09719:cas1 Type: universal Location: 198421-199311 bp Gene: pfam08798:cas6e Type: other Location: 199338-199877 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 199924-200586 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 200588-201730 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 201740-202270 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 202267-203835 bp Gene: cd09641:cas3HD Type: Type-I Location: 203838-206519 bp CRISPR array Location: 207294-207383 bp Num of repeats: 2 Spacers: s21-s21 CRISPR array Location: 207294-207383 bp Num of repeats: 2 Spacers: s21-s21 CRISPR array Location: 207478-207812 bp Num of repeats: 6 Spacers: s22-s26 CRISPR array Location: 207478-207812 bp Num of repeats: 6 Spacers: s22-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196811-198060 bp]: array | spacers
           [Locus range 207294-207383 bp]: array | spacers
           [Locus range 207478-207812 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)