CRISPRone

CRISPRone report for GCA_003862575.1_ASM386257v1

♦ Seq 1: RRAY01000011.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 119766 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56500-57911 bp Zoom in on locus 1 x22 CRISPR array Location: 56500-57911 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 56500-57911 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56500-57911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAY01000013.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 114658 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13694-13854 bp 2 Locus 2: 95070-95692 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 CRISPR array Location: 13694-13854 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 13694-13854 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 95070-95692 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 95070-95692 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13694-13854 bp]: array | spacers
           [Locus range 95070-95692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAY01000006.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 16955 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15329-15818 bp Zoom in on locus 1 x8 CRISPR array Location: 15329-15818 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 15329-15818 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15329-15818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAY01000003.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 444252 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99054-99148 bp 2 Locus 2: 343394-354546 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 99054-99148 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 99054-99148 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 343394-344308 bp Gene: pfam01881:cas6 Type: other Location: 344386-345123 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 345129-346979 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 346981-347895 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 347897-348598 bp Gene: cd09641:cas3HD Type: Type-I Location: 348609-350930 bp Gene: pfam01930:cas4 Type: Type-I Location: 350945-351496 bp Gene: cd09722:cas1 Type: universal Location: 351499-352479 bp Gene: cd09725:cas2 Type: universal Location: 352482-352748 bp CRISPR array Location: 352932-354546 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 352932-354546 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 99054-99148 bp]: array | spacers
           [Locus range 352932-354546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAY01000056.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00056, whole genome shotgun sequence

⇒Summary: seq-len = 12341 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11059-11746 bp Zoom in on locus 1 x11 CRISPR array Location: 11059-11746 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 11059-11746 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11059-11746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAY01000031.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00031, whole genome shotgun sequence

⇒Summary: seq-len = 91019 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27850-30481 bp Zoom in on locus 1 Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 27850-28521 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 28541-29368 bp Gene: unk Type: unknown Location: 29358-29750 bp Gene: mkCas0068:csf1gr8 Type: Subtype-IV-A Location: 29753-30481 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAY01000052.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00052, whole genome shotgun sequence

⇒Summary: seq-len = 29423 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5804-9737 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 5804-6160 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5804-6160 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 9381-9737 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 9381-9737 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5804-6160 bp]: array | spacers
           [Locus range 9381-9737 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RRAY01000007.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 567271 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16490-18094 bp 2 Locus 2: 321678-322103 bp 3 Locus 3: 484523-492388 bp 4 Locus 4: 565669-565763 bp Zoom in on locus 1 x25 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 16490-18094 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 16490-18094 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 321678-322103 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 321678-322103 bp Num of repeats: 7 Spacers: s25-s30 Gene: cd09641:cas3HD Type: Type-I Location: 484523-486931 bp Gene: cd09693:cas5 Type: Type-I Location: 486958-487755 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 487771-488784 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 488804-490279 bp Gene: pfam01881:cas6 Type: other Location: 490284-491021 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 491279-492388 bp CRISPR array Location: 565669-565763 bp Num of repeats: 2 Spacers: s31-s31 CRISPR array Location: 565669-565763 bp Num of repeats: 2 Spacers: s31-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16490-18094 bp]: array | spacers
           [Locus range 321678-322103 bp]: array | spacers
           [Locus range 565669-565763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RRAY01000014.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00014, whole genome shotgun sequence

⇒Summary: seq-len = 209887 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90805-91228 bp Zoom in on locus 1 x7 CRISPR array Location: 90805-91228 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90805-91228 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90805-91228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RRAY01000009.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 197312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31852-32081 bp Zoom in on locus 1 x4 CRISPR array Location: 31852-32081 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 31852-32081 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31852-32081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: RRAY01000033.1 Clostridioides difficile strain 17-305-09913 MRSN538017_contig00033, whole genome shotgun sequence

⇒Summary: seq-len = 161901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137418-137710 bp Zoom in on locus 1 x5 CRISPR array Location: 137418-137710 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 137418-137710 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137418-137710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)