CRISPRone

CRISPRone report for GCA_003862595.1_ASM386259v1

♦ Seq 1: RRAW01000053.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00053, whole genome shotgun sequence

⇒Summary: seq-len = 200775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91164-91985 bp Zoom in on locus 1 x13 CRISPR array Location: 91164-91985 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 91164-91985 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91164-91985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAW01000046.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00046, whole genome shotgun sequence

⇒Summary: seq-len = 184930 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17897-18521 bp 2 Locus 2: 109649-110840 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 x4 CRISPR array Location: 17897-18521 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17897-18521 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 109649-110010 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 109649-110010 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 110613-110840 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 110613-110840 bp Num of repeats: 4 Spacers: s15-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17897-18521 bp]: array | spacers
           [Locus range 109649-110010 bp]: array | spacers
           [Locus range 110613-110840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAW01000006.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 148254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143732-144744 bp Zoom in on locus 1 x16 CRISPR array Location: 143732-144744 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 143732-144744 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143732-144744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAW01000002.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 620539 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105375-105469 bp 2 Locus 2: 178739-186604 bp 3 Locus 3: 352113-352736 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 105375-105469 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 105375-105469 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178739-179848 bp Gene: pfam01881:cas6 Type: other Location: 180106-180843 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 180848-182323 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 182343-183356 bp Gene: cd09693:cas5 Type: Type-I Location: 183372-184169 bp Gene: cd09641:cas3HD Type: Type-I Location: 184196-186604 bp CRISPR array Location: 352113-352736 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 352113-352736 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 105375-105469 bp]: array | spacers
           [Locus range 352113-352736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAW01000009.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 101265 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86243-97121 bp Zoom in on locus 1 x21 CRISPR array Location: 86243-87583 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 86243-87583 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 87767-88033 bp Gene: cd09722:cas1 Type: universal Location: 88036-89016 bp Gene: pfam01930:cas4 Type: Type-I Location: 89019-89537 bp Gene: COG1203:cas3 Type: Type-I Location: 89585-91906 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 91917-92618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92620-93534 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 93536-95386 bp Gene: pfam01881:cas6 Type: other Location: 95392-96186 bp Gene: pfam13280:WYL Type: other Location: 96207-97121 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 86243-87583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAW01000012.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00012, whole genome shotgun sequence

⇒Summary: seq-len = 40452 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8907-16323 bp Zoom in on locus 1 x19 CRISPR array Location: 8907-10120 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 8907-10120 bp Num of repeats: 19 Spacers: s1-s18 Gene: COG1203:cas3 Type: Type-I Location: 10687-12669 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 12680-13750 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 13771-14919 bp Gene: pfam01881:cas6 Type: other Location: 14921-15685 bp Gene: cd09693:cas5 Type: Type-I Location: 15676-16323 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8907-10120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAW01000044.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00044, whole genome shotgun sequence

⇒Summary: seq-len = 14590 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5063-5617 bp Zoom in on locus 1 x9 CRISPR array Location: 5063-5617 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5063-5617 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5063-5617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RRAW01000003.1 Clostridioides difficile strain 17-314-01071 MRSN537966_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 199967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92647-92742 bp Zoom in on locus 1 x2 CRISPR array Location: 92647-92742 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 92647-92742 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92647-92742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)