CRISPRone

CRISPRone report for GCA_003862635.1_ASM386263v1

♦ Seq 1: RRAT01000010.1 Clostridioides difficile strain 17-279-09915 MRSN537902_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 475561 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90800-91094 bp Zoom in on locus 1 x5 CRISPR array Location: 90800-91094 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 90800-91094 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90800-91094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAT01000003.1 Clostridioides difficile strain 17-279-09915 MRSN537902_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 241175 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201703-202918 bp Zoom in on locus 1 x19 CRISPR array Location: 201703-202918 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 201703-202918 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 201703-202918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAT01000001.1 Clostridioides difficile strain 17-279-09915 MRSN537902_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 1003176 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244597-245155 bp 2 Locus 2: 318422-326287 bp 3 Locus 3: 488265-489280 bp 4 Locus 4: 838419-839631 bp 5 Locus 5: 890543-890703 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 Zoom in on locus 4 x19 Zoom in on locus 5 x3 CRISPR array Location: 244597-245155 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244597-245155 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318422-319531 bp Gene: pfam01881:cas6 Type: other Location: 319789-320526 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320531-322006 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322026-323039 bp Gene: cd09693:cas5 Type: Type-I Location: 323055-323852 bp Gene: cd09641:cas3HD Type: Type-I Location: 323879-326287 bp CRISPR array Location: 488265-489280 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488265-489280 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 838419-839631 bp Num of repeats: 19 Spacers: s24-s41 CRISPR array Location: 838419-839631 bp Num of repeats: 19 Spacers: s24-s41 CRISPR array Location: 890543-890703 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 890543-890703 bp Num of repeats: 3 Spacers: s42-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244597-245155 bp]: array | spacers
           [Locus range 488265-489280 bp]: array | spacers
           [Locus range 838419-839631 bp]: array | spacers
           [Locus range 890543-890703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAT01000006.1 Clostridioides difficile strain 17-279-09915 MRSN537902_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 341557 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79148-90448 bp Zoom in on locus 1 x27 CRISPR array Location: 79148-80883 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 79148-80883 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 81067-81333 bp Gene: cd09722:cas1 Type: universal Location: 81336-82316 bp Gene: pfam01930:cas4 Type: Type-I Location: 82319-82837 bp Gene: COG1203:cas3 Type: Type-I Location: 82885-85206 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 85217-85918 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 85920-86834 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 86836-88713 bp Gene: pfam01881:cas6 Type: other Location: 88719-89513 bp Gene: pfam13280:WYL Type: other Location: 89534-90448 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79148-80883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAT01000022.1 Clostridioides difficile strain 17-279-09915 MRSN537902_contig00022, whole genome shotgun sequence

⇒Summary: seq-len = 132634 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112633-113722 bp Zoom in on locus 1 x17 CRISPR array Location: 112633-113722 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112633-113722 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112633-113722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)