CRISPRone

CRISPRone report for GCA_003862665.1_ASM386266v1

♦ Seq 1: RRAQ01000024.1 Clostridioides difficile strain 17-265-05718 MRSN537869_contig00024, whole genome shotgun sequence

⇒Summary: seq-len = 114499 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13675-13964 bp 2 Locus 2: 94576-96384 bp Zoom in on locus 1 x5 Zoom in on locus 2 x28 CRISPR array Location: 13675-13964 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13675-13964 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 94576-96384 bp Num of repeats: 28 Spacers: s5-s31 CRISPR array Location: 94576-96384 bp Num of repeats: 28 Spacers: s5-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13675-13964 bp]: array | spacers
           [Locus range 94576-96384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAQ01000025.1 Clostridioides difficile strain 17-265-05718 MRSN537869_contig00025, whole genome shotgun sequence

⇒Summary: seq-len = 210610 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91730-92553 bp Zoom in on locus 1 x13 CRISPR array Location: 91730-92553 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 91730-92553 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91730-92553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAQ01000036.1 Clostridioides difficile strain 17-265-05718 MRSN537869_contig00036, whole genome shotgun sequence

⇒Summary: seq-len = 36461 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15905-18516 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 15905-16590 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 15905-16590 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18295-18516 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 18295-18516 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15905-16590 bp]: array | spacers
           [Locus range 18295-18516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAQ01000022.1 Clostridioides difficile strain 17-265-05718 MRSN537869_contig00022, whole genome shotgun sequence

⇒Summary: seq-len = 125517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63530-64864 bp Zoom in on locus 1 x21 CRISPR array Location: 63530-64864 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 63530-64864 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63530-64864 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAQ01000001.1 Clostridioides difficile strain 17-265-05718 MRSN537869_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 1142941 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239469-239965 bp 2 Locus 2: 313247-321593 bp 3 Locus 3: 485013-485565 bp 4 Locus 4: 889355-889646 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x9 Zoom in on locus 4 x5 CRISPR array Location: 239469-239965 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 239469-239965 bp Num of repeats: 8 Spacers: s1-s7 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313247-314356 bp Gene: unk Type: unknown Location: 314815-314991 bp Gene: pfam01881:cas6 Type: other Location: 315092-315829 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 315834-317309 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317329-318345 bp Gene: cd09693:cas5 Type: Type-I Location: 318361-319158 bp Gene: cd09641:cas3HD Type: Type-I Location: 319185-321593 bp CRISPR array Location: 485013-485565 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 485013-485565 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 889355-889646 bp Num of repeats: 5 Spacers: s16-s19 CRISPR array Location: 889355-889646 bp Num of repeats: 5 Spacers: s16-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239469-239965 bp]: array | spacers
           [Locus range 485013-485565 bp]: array | spacers
           [Locus range 889355-889646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAQ01000026.1 Clostridioides difficile strain 17-265-05718 MRSN537869_contig00026, whole genome shotgun sequence

⇒Summary: seq-len = 476032 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275138-285060 bp Zoom in on locus 1 x6 CRISPR array Location: 275138-275495 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 275138-275495 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 275679-275945 bp Gene: cd09722:cas1 Type: universal Location: 275948-276928 bp Gene: pfam01930:cas4 Type: Type-I Location: 276931-277449 bp Gene: cd09641:cas3HD Type: Type-I Location: 277497-279818 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 279829-280530 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280532-281446 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281448-283325 bp Gene: pfam01881:cas6 Type: other Location: 283331-284125 bp Gene: pfam13280:WYL Type: other Location: 284146-285060 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275138-275495 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)