CRISPRone

CRISPRone report for GCA_003862685.1_ASM386268v1

♦ Seq 1: RRAP01000001.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 258387 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196001-197017 bp Zoom in on locus 1 x16 CRISPR array Location: 196001-197017 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 196001-197017 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196001-197017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAP01000011.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 289074 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78189-78875 bp 2 Locus 2: 287264-288217 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78189-78875 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78189-78875 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287264-288217 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287264-288217 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78189-78875 bp]: array | spacers
           [Locus range 287264-288217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAP01000007.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 78064 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58068-64600 bp Zoom in on locus 1 x10 CRISPR array Location: 58068-58690 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 58068-58690 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 58943-60928 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 60939-62009 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 62030-63196 bp Gene: pfam01881:cas6 Type: other Location: 63198-63962 bp Gene: cd09693:cas5 Type: Type-I Location: 63953-64600 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 58068-58690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAP01000025.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00025, whole genome shotgun sequence

⇒Summary: seq-len = 118787 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16361-26537 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 16361-17248 bp Gene: pfam01881:cas6 Type: other Location: 17326-18063 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18069-19946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 19948-20862 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20864-21565 bp Gene: COG1203:cas3 Type: Type-I Location: 21576-23897 bp Gene: pfam01930:cas4 Type: Type-I Location: 23912-24463 bp Gene: cd09722:cas1 Type: universal Location: 24466-25446 bp Gene: cd09725:cas2 Type: universal Location: 25449-25715 bp CRISPR array Location: 25899-27384 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 25899-27384 bp Num of repeats: 23 Spacers: s1-s22 Gene: unk Type: unknown Location: 25915-26082 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26304-26537 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25899-27384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAP01000003.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 149012 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23218-25728 bp 2 Locus 2: 118112-118405 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23218-23507 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23218-23507 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25372-25728 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25372-25728 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118112-118405 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118112-118405 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23218-23507 bp]: array | spacers
           [Locus range 25372-25728 bp]: array | spacers
           [Locus range 118112-118405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAP01000005.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 353466 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11818-11912 bp 2 Locus 2: 53533-54158 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11818-11912 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11818-11912 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53533-54158 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53533-54158 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11818-11912 bp]: array | spacers
           [Locus range 53533-54158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAP01000012.1 Clostridioides difficile strain 17-268-09541 MRSN537850_contig00012, whole genome shotgun sequence

⇒Summary: seq-len = 236571 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45250-53125 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45250-47658 bp Gene: cd09693:cas5 Type: Type-I Location: 47685-48491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48507-49520 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49540-51015 bp Gene: pfam01881:cas6 Type: other Location: 51020-51757 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52016-53125 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)