CRISPRone

CRISPRone report for GCA_003862755.1_ASM386275v1

♦ Seq 1: RRAL01000036.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00036, whole genome shotgun sequence

⇒Summary: seq-len = 131424 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18305-18797 bp Zoom in on locus 1 x8 CRISPR array Location: 18305-18797 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18305-18797 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18305-18797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAL01000001.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 371550 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284124-284217 bp Zoom in on locus 1 x2 CRISPR array Location: 284124-284217 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 284124-284217 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284124-284217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAL01000029.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00029, whole genome shotgun sequence

⇒Summary: seq-len = 261513 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164994-175081 bp Zoom in on locus 1 x9 Gene: pfam13280:WYL Type: other Location: 164994-165881 bp Gene: pfam01881:cas6 Type: other Location: 165959-166696 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 166702-168579 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168581-169495 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 169497-170198 bp Gene: COG1203:cas3 Type: Type-I Location: 170209-172530 bp Gene: pfam01930:cas4 Type: Type-I Location: 172545-173015 bp Gene: cd09722:cas1 Type: universal Location: 173099-174079 bp Gene: cd09725:cas2 Type: universal Location: 174082-174348 bp CRISPR array Location: 174532-175081 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 174532-175081 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174532-175081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAL01000037.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00037, whole genome shotgun sequence

⇒Summary: seq-len = 118594 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60710-62121 bp Zoom in on locus 1 x22 CRISPR array Location: 60710-62121 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 60710-62121 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60710-62121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAL01000002.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 587297 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 267669-268090 bp 2 Locus 2: 433616-441481 bp 3 Locus 3: 514764-515259 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 267669-268090 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 267669-268090 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 433616-436024 bp Gene: cd09693:cas5 Type: Type-I Location: 436051-436848 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 436864-437877 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 437897-439372 bp Gene: pfam01881:cas6 Type: other Location: 439377-440114 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 440372-441481 bp CRISPR array Location: 514764-515259 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 514764-515259 bp Num of repeats: 8 Spacers: s7-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 267669-268090 bp]: array | spacers
           [Locus range 514764-515259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAL01000027.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00027, whole genome shotgun sequence

⇒Summary: seq-len = 57122 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22686-28354 bp 2 Locus 2: 52264-52424 bp Zoom in on locus 1 x2 x5 x5 Zoom in on locus 2 x3 CRISPR array Location: 22686-22778 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22686-22778 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25126-25418 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 25126-25418 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 28062-28354 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 28062-28354 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 52264-52424 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 52264-52424 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22686-22778 bp]: array | spacers
           [Locus range 25126-25418 bp]: array | spacers
           [Locus range 28062-28354 bp]: array | spacers
           [Locus range 52264-52424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAL01000025.1 Clostridioides difficile strain 17-255-03486 MRSN510136_contig00025, whole genome shotgun sequence

⇒Summary: seq-len = 206685 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91430-92248 bp Zoom in on locus 1 x13 CRISPR array Location: 91430-92248 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 91430-92248 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91430-92248 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)