CRISPRone

CRISPRone report for GCA_003862785.1_ASM386278v1

♦ Seq 1: RRAI01000007.1 Clostridioides difficile strain 17-250-06287 MRSN510109_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 51262 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38589-38683 bp Zoom in on locus 1 x2 CRISPR array Location: 38589-38683 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 38589-38683 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38589-38683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAI01000015.1 Clostridioides difficile strain 17-250-06287 MRSN510109_contig00015, whole genome shotgun sequence

⇒Summary: seq-len = 69554 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4843-5993 bp Zoom in on locus 1 x18 CRISPR array Location: 4843-5993 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 4843-5993 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4843-5993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAI01000018.1 Clostridioides difficile strain 17-250-06287 MRSN510109_contig00018, whole genome shotgun sequence

⇒Summary: seq-len = 371649 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80588-81204 bp 2 Locus 2: 244475-252796 bp 3 Locus 3: 326079-326436 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80588-81204 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80588-81204 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244475-246883 bp Gene: cd09693:cas5 Type: Type-I Location: 246910-247707 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247723-248739 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248759-250234 bp Gene: pfam01881:cas6 Type: other Location: 250239-250976 bp Gene: unk Type: unknown Location: 251077-251253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251687-252796 bp CRISPR array Location: 326079-326436 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326079-326436 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80588-81204 bp]: array | spacers
           [Locus range 326079-326436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAI01000013.1 Clostridioides difficile strain 17-250-06287 MRSN510109_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 349471 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125148-125707 bp 2 Locus 2: 235998-236755 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 CRISPR array Location: 125148-125707 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 125148-125707 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 235998-236755 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 235998-236755 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125148-125707 bp]: array | spacers
           [Locus range 235998-236755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAI01000030.1 Clostridioides difficile strain 17-250-06287 MRSN510109_contig00030, whole genome shotgun sequence

⇒Summary: seq-len = 401905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110170-110330 bp Zoom in on locus 1 x3 CRISPR array Location: 110170-110330 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110170-110330 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110170-110330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAI01000009.1 Clostridioides difficile strain 17-250-06287 MRSN510109_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 317317 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 206490-217339 bp Zoom in on locus 1 x21 Gene: pfam13280:WYL Type: other Location: 206490-207377 bp Gene: pfam01881:cas6 Type: other Location: 207455-208192 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 208198-210048 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 210050-210964 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 210966-211667 bp Gene: COG1203:cas3 Type: Type-I Location: 211678-213999 bp Gene: pfam01930:cas4 Type: Type-I Location: 214014-214565 bp Gene: cd09722:cas1 Type: universal Location: 214568-215548 bp Gene: cd09725:cas2 Type: universal Location: 215551-215817 bp CRISPR array Location: 216001-217339 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 216001-217339 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 216001-217339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)