CRISPRone

CRISPRone report for GCA_003862835.1_ASM386283v1

♦ Seq 1: RRAG01000029.1 Clostridioides difficile strain 17-246-05417 MRSN510084_contig00029, whole genome shotgun sequence

⇒Summary: seq-len = 252412 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89450-90003 bp Zoom in on locus 1 x9 CRISPR array Location: 89450-90003 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 89450-90003 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89450-90003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAG01000024.1 Clostridioides difficile strain 17-246-05417 MRSN510084_contig00024, whole genome shotgun sequence

⇒Summary: seq-len = 201457 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108609-109431 bp Zoom in on locus 1 x13 CRISPR array Location: 108609-109431 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 108609-109431 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108609-109431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAG01000026.1 Clostridioides difficile strain 17-246-05417 MRSN510084_contig00026, whole genome shotgun sequence

⇒Summary: seq-len = 184809 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17792-18416 bp 2 Locus 2: 109544-110867 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 x6 CRISPR array Location: 17792-18416 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17792-18416 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 109544-109905 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 109544-109905 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 110508-110867 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 110508-110867 bp Num of repeats: 6 Spacers: s15-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17792-18416 bp]: array | spacers
           [Locus range 109544-109905 bp]: array | spacers
           [Locus range 110508-110867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAG01000001.1 Clostridioides difficile strain 17-246-05417 MRSN510084_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 1174648 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3540-4553 bp 2 Locus 2: 322312-322406 bp 3 Locus 3: 683080-683702 bp 4 Locus 4: 849211-857076 bp 5 Locus 5: 930347-930440 bp Zoom in on locus 1 x16 Zoom in on locus 2 x2 Zoom in on locus 3 x10 Zoom in on locus 4 Zoom in on locus 5 x2 CRISPR array Location: 3540-4553 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3540-4553 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 322312-322406 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 322312-322406 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 683080-683702 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 683080-683702 bp Num of repeats: 10 Spacers: s17-s25 Gene: cd09641:cas3HD Type: Type-I Location: 849211-851619 bp Gene: cd09693:cas5 Type: Type-I Location: 851646-852443 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 852459-853472 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 853492-854967 bp Gene: pfam01881:cas6 Type: other Location: 854972-855709 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 855967-857076 bp CRISPR array Location: 930347-930440 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 930347-930440 bp Num of repeats: 2 Spacers: s26-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3540-4553 bp]: array | spacers
           [Locus range 322312-322406 bp]: array | spacers
           [Locus range 683080-683702 bp]: array | spacers
           [Locus range 930347-930440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAG01000005.1 Clostridioides difficile strain 17-246-05417 MRSN510084_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 351863 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24116-31533 bp 2 Locus 2: 254781-265633 bp Zoom in on locus 1 x19 Zoom in on locus 2 x21 Gene: cd09693:cas5 Type: Type-I Location: 24116-24763 bp Gene: pfam01881:cas6 Type: other Location: 24754-25518 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 25520-26668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 26689-27759 bp Gene: COG1203:cas3 Type: Type-I Location: 27770-29752 bp CRISPR array Location: 30319-31533 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 30319-31533 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam13280:WYL Type: other Location: 254781-255668 bp Gene: pfam01881:cas6 Type: other Location: 255746-256483 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256489-258339 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258341-259255 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259257-259958 bp Gene: COG1203:cas3 Type: Type-I Location: 259969-262290 bp Gene: pfam01930:cas4 Type: Type-I Location: 262305-262856 bp Gene: cd09722:cas1 Type: universal Location: 262859-263839 bp Gene: cd09725:cas2 Type: universal Location: 263842-264108 bp CRISPR array Location: 264292-265633 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 264292-265633 bp Num of repeats: 21 Spacers: s19-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30319-31533 bp]: array | spacers
           [Locus range 264292-265633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)