CRISPRone

CRISPRone report for GCA_003862885.1_ASM386288v1

♦ Seq 1: RRAA01000001.1 Clostridioides difficile strain 17-226-02158 MRSN510020_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 240480 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153208-153369 bp Zoom in on locus 1 x3 CRISPR array Location: 153208-153369 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 153208-153369 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 153208-153369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAA01000027.1 Clostridioides difficile strain 17-226-02158 MRSN510020_contig00027, whole genome shotgun sequence

⇒Summary: seq-len = 216739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90949-92162 bp Zoom in on locus 1 x19 CRISPR array Location: 90949-92162 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 90949-92162 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90949-92162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAA01000015.1 Clostridioides difficile strain 17-226-02158 MRSN510020_contig00015, whole genome shotgun sequence

⇒Summary: seq-len = 70789 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9252-10139 bp Zoom in on locus 1 x14 CRISPR array Location: 9252-10139 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 9252-10139 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9252-10139 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAA01000017.1 Clostridioides difficile strain 17-226-02158 MRSN510020_contig00017, whole genome shotgun sequence

⇒Summary: seq-len = 121978 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13042-14495 bp 2 Locus 2: 105149-105642 bp Zoom in on locus 1 x7 x7 Zoom in on locus 2 x8 CRISPR array Location: 13042-13465 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 13042-13465 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 14069-14495 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 14069-14495 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 105149-105642 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 105149-105642 bp Num of repeats: 8 Spacers: s13-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13042-13465 bp]: array | spacers
           [Locus range 14069-14495 bp]: array | spacers
           [Locus range 105149-105642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAA01000002.1 Clostridioides difficile strain 17-226-02158 MRSN510020_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 758371 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268251-269006 bp 2 Locus 2: 434527-442864 bp 3 Locus 3: 516089-517045 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x15 CRISPR array Location: 268251-269006 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 268251-269006 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 434527-436935 bp Gene: cd09693:cas5 Type: Type-I Location: 436962-437768 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 437784-438797 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 438816-440282 bp Gene: pfam01881:cas6 Type: other Location: 440287-441024 bp Gene: unk Type: unknown Location: 441125-441301 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 441755-442864 bp CRISPR array Location: 516089-517045 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 516089-517045 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 268251-269006 bp]: array | spacers
           [Locus range 516089-517045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAA01000024.1 Clostridioides difficile strain 17-226-02158 MRSN510020_contig00024, whole genome shotgun sequence

⇒Summary: seq-len = 299307 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163191-174311 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 163191-164078 bp Gene: pfam01881:cas6 Type: other Location: 164156-164893 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 164899-166749 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 166751-167665 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 167667-168368 bp Gene: COG1203:cas3 Type: Type-I Location: 168379-170700 bp Gene: pfam01930:cas4 Type: Type-I Location: 170715-171266 bp Gene: cd09722:cas1 Type: universal Location: 171269-172249 bp Gene: cd09725:cas2 Type: universal Location: 172252-172518 bp CRISPR array Location: 172702-174311 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 172702-174311 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 172702-174311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)