CRISPRone

CRISPRone report for GCA_003862895.1_ASM386289v1

♦ Seq 1: RRAC01000092.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00092, whole genome shotgun sequence

⇒Summary: seq-len = 130924 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112376-113132 bp Zoom in on locus 1 x12 CRISPR array Location: 112376-113132 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 112376-113132 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112376-113132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAC01000049.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00049, whole genome shotgun sequence

⇒Summary: seq-len = 51040 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6158-6515 bp Zoom in on locus 1 x6 CRISPR array Location: 6158-6515 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6158-6515 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6158-6515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAC01000105.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00105, whole genome shotgun sequence

⇒Summary: seq-len = 42434 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38305-39060 bp Zoom in on locus 1 x12 CRISPR array Location: 38305-39060 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 38305-39060 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38305-39060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAC01000004.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00004, whole genome shotgun sequence

⇒Summary: seq-len = 171997 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29355-40425 bp Zoom in on locus 1 x24 CRISPR array Location: 29355-30887 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 29355-30887 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 31071-31337 bp Gene: cd09722:cas1 Type: universal Location: 31340-32320 bp Gene: pfam01930:cas4 Type: Type-I Location: 32323-32841 bp Gene: COG1203:cas3 Type: Type-I Location: 32889-35210 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 35221-35922 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 35924-36838 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 36840-38690 bp Gene: pfam01881:cas6 Type: other Location: 38696-39490 bp Gene: pfam13280:WYL Type: other Location: 39511-40425 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29355-30887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAC01000047.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00047, whole genome shotgun sequence

⇒Summary: seq-len = 99073 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59641-67962 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 59641-62049 bp Gene: cd09693:cas5 Type: Type-I Location: 62076-62873 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62889-63905 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 63925-65400 bp Gene: pfam01881:cas6 Type: other Location: 65405-66142 bp Gene: unk Type: unknown Location: 66243-66419 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 66853-67962 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAC01000035.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00035, whole genome shotgun sequence

⇒Summary: seq-len = 121952 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82008-82169 bp Zoom in on locus 1 x3 CRISPR array Location: 82008-82169 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 82008-82169 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82008-82169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAC01000076.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00076, whole genome shotgun sequence

⇒Summary: seq-len = 128311 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53424-53853 bp Zoom in on locus 1 x7 CRISPR array Location: 53424-53853 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 53424-53853 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53424-53853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RRAC01000052.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00052, whole genome shotgun sequence

⇒Summary: seq-len = 12823 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8735-9883 bp Zoom in on locus 1 x18 CRISPR array Location: 8735-9883 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 8735-9883 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8735-9883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RRAC01000009.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 34477 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12527-12620 bp Zoom in on locus 1 x2 CRISPR array Location: 12527-12620 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12527-12620 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12527-12620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RRAC01000042.1 Clostridioides difficile strain 17-241-11331 MRSN510048_contig00042, whole genome shotgun sequence

⇒Summary: seq-len = 114728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64243-64859 bp Zoom in on locus 1 x10 CRISPR array Location: 64243-64859 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 64243-64859 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64243-64859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)