CRISPRone

CRISPRone report for GCA_003862935.1_ASM386293v1

♦ Seq 1: RQZZ01000001.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 190855 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18010-18699 bp 2 Locus 2: 98929-99023 bp Zoom in on locus 1 x11 Zoom in on locus 2 x2 CRISPR array Location: 18010-18699 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18010-18699 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 98929-99023 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 98929-99023 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18010-18699 bp]: array | spacers
           [Locus range 98929-99023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZZ01000029.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00029, whole genome shotgun sequence

⇒Summary: seq-len = 259436 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162469-163483 bp Zoom in on locus 1 x16 CRISPR array Location: 162469-163483 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 162469-163483 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162469-163483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZZ01000035.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00035, whole genome shotgun sequence

⇒Summary: seq-len = 201090 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108860-110278 bp Zoom in on locus 1 x22 CRISPR array Location: 108860-110278 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 108860-110278 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108860-110278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZZ01000002.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 463526 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61829-64166 bp 2 Locus 2: 381492-381781 bp Zoom in on locus 1 x36 Zoom in on locus 2 x5 CRISPR array Location: 61829-64166 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 61829-64166 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 381492-381781 bp Num of repeats: 5 Spacers: s36-s39 CRISPR array Location: 381492-381781 bp Num of repeats: 5 Spacers: s36-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61829-64166 bp]: array | spacers
           [Locus range 381492-381781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZZ01000018.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00018, whole genome shotgun sequence

⇒Summary: seq-len = 431047 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255665-266758 bp Zoom in on locus 1 x24 CRISPR array Location: 255665-257220 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 255665-257220 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 257404-257670 bp Gene: cd09722:cas1 Type: universal Location: 257673-258653 bp Gene: pfam01930:cas4 Type: Type-I Location: 258656-259174 bp Gene: COG1203:cas3 Type: Type-I Location: 259222-261543 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261554-262255 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262257-263171 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263173-265023 bp Gene: pfam01881:cas6 Type: other Location: 265029-265823 bp Gene: pfam13280:WYL Type: other Location: 265844-266758 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255665-257220 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZZ01000003.1 Clostridioides difficile strain 17-226-09131 MRSN510011_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 696214 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268756-270360 bp 2 Locus 2: 436232-444097 bp Zoom in on locus 1 x25 Zoom in on locus 2 CRISPR array Location: 268756-270360 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 268756-270360 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09641:cas3HD Type: Type-I Location: 436232-438640 bp Gene: cd09693:cas5 Type: Type-I Location: 438667-439464 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 439480-440493 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 440513-441988 bp Gene: pfam01881:cas6 Type: other Location: 441993-442730 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 442988-444097 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 268756-270360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)