CRISPRone

CRISPRone report for GCA_003862945.1_ASM386294v1

♦ Seq 1: RQZX01000057.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00057, whole genome shotgun sequence

⇒Summary: seq-len = 68687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51416-52235 bp Zoom in on locus 1 x13 CRISPR array Location: 51416-52235 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 51416-52235 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51416-52235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZX01000009.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 173847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16366-16459 bp Zoom in on locus 1 x2 CRISPR array Location: 16366-16459 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 16366-16459 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16366-16459 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZX01000012.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00012, whole genome shotgun sequence

⇒Summary: seq-len = 83214 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17567-17988 bp Zoom in on locus 1 x7 CRISPR array Location: 17567-17988 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 17567-17988 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17567-17988 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZX01000033.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00033, whole genome shotgun sequence

⇒Summary: seq-len = 379163 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 204250-214428 bp Zoom in on locus 1 x10 CRISPR array Location: 204250-204863 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 204250-204863 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 205047-205313 bp Gene: cd09722:cas1 Type: universal Location: 205316-206296 bp Gene: pfam01930:cas4 Type: Type-I Location: 206380-206817 bp Gene: COG1203:cas3 Type: Type-I Location: 206865-209186 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 209197-209898 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 209900-210814 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 210816-212693 bp Gene: pfam01881:cas6 Type: other Location: 212699-213493 bp Gene: pfam13280:WYL Type: other Location: 213514-214428 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 204250-204863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZX01000001.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 118595 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60707-62118 bp Zoom in on locus 1 x22 CRISPR array Location: 60707-62118 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 60707-62118 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60707-62118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZX01000013.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 240633 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100233-108098 bp 2 Locus 2: 181381-181876 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 100233-102641 bp Gene: cd09693:cas5 Type: Type-I Location: 102668-103465 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 103481-104494 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 104514-105989 bp Gene: pfam01881:cas6 Type: other Location: 105994-106731 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 106989-108098 bp CRISPR array Location: 181381-181876 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 181381-181876 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 181381-181876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZX01000083.1 Clostridioides difficile strain 17-216-04337 MRSN509990_contig00083, whole genome shotgun sequence

⇒Summary: seq-len = 126693 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108129-108620 bp Zoom in on locus 1 x8 CRISPR array Location: 108129-108620 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 108129-108620 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108129-108620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)