CRISPRone

CRISPRone report for GCA_003862965.1_ASM386296v1

♦ Seq 1: RQZW01000066.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00066, whole genome shotgun sequence

⇒Summary: seq-len = 124699 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107418-108240 bp Zoom in on locus 1 x13 CRISPR array Location: 107418-108240 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 107418-108240 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107418-108240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZW01000011.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 81791 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8378-8473 bp Zoom in on locus 1 x2 CRISPR array Location: 8378-8473 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8378-8473 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8378-8473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZW01000054.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00054, whole genome shotgun sequence

⇒Summary: seq-len = 14585 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5060-5614 bp Zoom in on locus 1 x9 CRISPR array Location: 5060-5614 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5060-5614 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5060-5614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZW01000101.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00101, whole genome shotgun sequence

⇒Summary: seq-len = 8780 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 565-1756 bp Zoom in on locus 1 x6 x4 CRISPR array Location: 565-926 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 565-926 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1529-1756 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 1529-1756 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 565-926 bp]: array | spacers
           [Locus range 1529-1756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZW01000020.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00020, whole genome shotgun sequence

⇒Summary: seq-len = 11263 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6625-7637 bp Zoom in on locus 1 x16 CRISPR array Location: 6625-7637 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 6625-7637 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6625-7637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZW01000004.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00004, whole genome shotgun sequence

⇒Summary: seq-len = 144540 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3653-3747 bp 2 Locus 2: 77017-84882 bp Zoom in on locus 1 x2 Zoom in on locus 2 CRISPR array Location: 3653-3747 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3653-3747 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 77017-78126 bp Gene: pfam01881:cas6 Type: other Location: 78384-79121 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 79126-80601 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 80621-81634 bp Gene: cd09693:cas5 Type: Type-I Location: 81650-82447 bp Gene: cd09641:cas3HD Type: Type-I Location: 82474-84882 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3653-3747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZW01000028.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00028, whole genome shotgun sequence

⇒Summary: seq-len = 16867 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 565-7982 bp Zoom in on locus 1 x19 Gene: cd09693:cas5 Type: Type-I Location: 565-1212 bp Gene: pfam01881:cas6 Type: other Location: 1203-1967 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 1969-3117 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3138-4208 bp Gene: COG1203:cas3 Type: Type-I Location: 4219-6201 bp CRISPR array Location: 6768-7982 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 6768-7982 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6768-7982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RQZW01000006.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 55505 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53322-53945 bp Zoom in on locus 1 x10 CRISPR array Location: 53322-53945 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 53322-53945 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53322-53945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RQZW01000031.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00031, whole genome shotgun sequence

⇒Summary: seq-len = 142306 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25661-36513 bp Zoom in on locus 1 x21 Gene: pfam13280:WYL Type: other Location: 25661-26548 bp Gene: pfam01881:cas6 Type: other Location: 26626-27363 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 27369-29219 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 29221-30135 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 30137-30838 bp Gene: COG1203:cas3 Type: Type-I Location: 30849-33170 bp Gene: pfam01930:cas4 Type: Type-I Location: 33185-33736 bp Gene: cd09722:cas1 Type: universal Location: 33739-34719 bp Gene: cd09725:cas2 Type: universal Location: 34722-34988 bp CRISPR array Location: 35172-36513 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 35172-36513 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35172-36513 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RQZW01000083.1 Clostridioides difficile strain 17-218-01102 MRSN509981_contig00083, whole genome shotgun sequence

⇒Summary: seq-len = 48476 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18031-18655 bp Zoom in on locus 1 x10 CRISPR array Location: 18031-18655 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18031-18655 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18031-18655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)