CRISPRone

CRISPRone report for GCA_003862975.1_ASM386297v1

♦ Seq 1: RQZV01000242.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00242, whole genome shotgun sequence

⇒Summary: seq-len = 17654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1761-2250 bp Zoom in on locus 1 x8 CRISPR array Location: 1761-2250 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1761-2250 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1761-2250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZV01000035.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00035, whole genome shotgun sequence

⇒Summary: seq-len = 22415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20344-20439 bp Zoom in on locus 1 x2 CRISPR array Location: 20344-20439 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 20344-20439 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20344-20439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZV01000339.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00339, whole genome shotgun sequence

⇒Summary: seq-len = 15794 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8090-8183 bp Zoom in on locus 1 x2 CRISPR array Location: 8090-8183 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8090-8183 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8090-8183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZV01000092.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00092, whole genome shotgun sequence

⇒Summary: seq-len = 4706 bp; # of CRISPR array = 0; # of cas gene = 5  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4703 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 2-268 bp Gene: cd09722:cas1 Type: universal Location: 271-1251 bp Gene: pfam01930:cas4 Type: Type-I Location: 1254-1772 bp Gene: COG1203:cas3 Type: Type-I Location: 1820-4141 bp Gene: cd09693:cas5 Type: Type-I Location: 4152-4703 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZV01000066.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00066, whole genome shotgun sequence

⇒Summary: seq-len = 899 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-619 bp Zoom in on locus 1 x10 CRISPR array Location: 0-619 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 0-619 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZV01000091.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00091, whole genome shotgun sequence

⇒Summary: seq-len = 3801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1920-3728 bp Zoom in on locus 1 x28 CRISPR array Location: 1920-3728 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 1920-3728 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1920-3728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZV01000065.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00065, whole genome shotgun sequence

⇒Summary: seq-len = 5233 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4739-5229 bp Zoom in on locus 1 x8 CRISPR array Location: 4739-5229 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4739-5229 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4739-5229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RQZV01000121.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00121, whole genome shotgun sequence

⇒Summary: seq-len = 14945 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6278-14143 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 6278-8686 bp Gene: cd09693:cas5 Type: Type-I Location: 8713-9510 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 9526-10539 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 10559-12034 bp Gene: pfam01881:cas6 Type: other Location: 12039-12776 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 13034-14143 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RQZV01000169.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00169, whole genome shotgun sequence

⇒Summary: seq-len = 4186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2960-3581 bp Zoom in on locus 1 x10 CRISPR array Location: 2960-3581 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2960-3581 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2960-3581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RQZV01000131.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00131, whole genome shotgun sequence

⇒Summary: seq-len = 26528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25863-26288 bp Zoom in on locus 1 x7 CRISPR array Location: 25863-26288 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 25863-26288 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25863-26288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: RQZV01000093.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00093, whole genome shotgun sequence

⇒Summary: seq-len = 27139 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-4650 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 1-147 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 149-1063 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1065-2915 bp Gene: pfam01881:cas6 Type: other Location: 2921-3715 bp Gene: pfam13280:WYL Type: other Location: 3736-4650 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: RQZV01000101.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00101, whole genome shotgun sequence

⇒Summary: seq-len = 1801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186-937 bp Zoom in on locus 1 x12 CRISPR array Location: 186-937 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 186-937 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 186-937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: RQZV01000193.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00193, whole genome shotgun sequence

⇒Summary: seq-len = 19354 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5969-6927 bp Zoom in on locus 1 x15 CRISPR array Location: 5969-6927 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 5969-6927 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5969-6927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: RQZV01000283.1 Clostridioides difficile strain 17-203-08843 MRSN509972_contig00283, whole genome shotgun sequence

⇒Summary: seq-len = 10649 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8588-9148 bp Zoom in on locus 1 x9 CRISPR array Location: 8588-9148 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8588-9148 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8588-9148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)