CRISPRone

CRISPRone report for GCA_003863005.1_ASM386300v1

♦ Seq 1: RQZT01000002.1 Clostridioides difficile strain 17-098-0692 MRSN469197_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 423671 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167006-177230 bp Zoom in on locus 1 x11 CRISPR array Location: 167006-167692 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 167006-167692 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 167876-168142 bp Gene: cd09722:cas1 Type: universal Location: 168145-169125 bp Gene: pfam01930:cas4 Type: Type-I Location: 169128-169646 bp Gene: COG1203:cas3 Type: Type-I Location: 169694-172015 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 172026-172727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 172729-173643 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 173645-175495 bp Gene: pfam01881:cas6 Type: other Location: 175501-176295 bp Gene: pfam13280:WYL Type: other Location: 176316-177230 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 167006-167692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZT01000008.1 Clostridioides difficile strain 17-098-0692 MRSN469197_contig00008, whole genome shotgun sequence

⇒Summary: seq-len = 681443 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12192-12550 bp 2 Locus 2: 87423-88506 bp 3 Locus 3: 389811-390565 bp 4 Locus 4: 553942-562251 bp 5 Locus 5: 635531-635624 bp Zoom in on locus 1 x6 Zoom in on locus 2 x17 Zoom in on locus 3 x12 Zoom in on locus 4 Zoom in on locus 5 x2 CRISPR array Location: 12192-12550 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 12192-12550 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 87423-88506 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 87423-88506 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 389811-390565 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 389811-390565 bp Num of repeats: 12 Spacers: s22-s32 Gene: cd09641:cas3HD Type: Type-I Location: 553942-556350 bp Gene: cd09693:cas5 Type: Type-I Location: 556377-557174 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 557190-558203 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 558223-559689 bp Gene: pfam01881:cas6 Type: other Location: 559694-560431 bp Gene: unk Type: unknown Location: 560532-560708 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 561142-562251 bp CRISPR array Location: 635531-635624 bp Num of repeats: 2 Spacers: s33-s33 CRISPR array Location: 635531-635624 bp Num of repeats: 2 Spacers: s33-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12192-12550 bp]: array | spacers
           [Locus range 87423-88506 bp]: array | spacers
           [Locus range 389811-390565 bp]: array | spacers
           [Locus range 635531-635624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZT01000029.1 Clostridioides difficile strain 17-098-0692 MRSN469197_contig00029, whole genome shotgun sequence

⇒Summary: seq-len = 356137 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25817-25977 bp 2 Locus 2: 115757-116380 bp 3 Locus 3: 226738-227160 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x7 CRISPR array Location: 25817-25977 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 25817-25977 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 115757-116380 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 115757-116380 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 226738-227160 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 226738-227160 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25817-25977 bp]: array | spacers
           [Locus range 115757-116380 bp]: array | spacers
           [Locus range 226738-227160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZT01000022.1 Clostridioides difficile strain 17-098-0692 MRSN469197_contig00022, whole genome shotgun sequence

⇒Summary: seq-len = 118539 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60669-62074 bp Zoom in on locus 1 x22 CRISPR array Location: 60669-62074 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 60669-62074 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60669-62074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)